Assessing Adaptation Of A Lentil (Lens culinaris Medik.) Diversity Panel To Temperature And Photoperiod
Assessing Adaptation Of A Lentil (Lens culinaris Medik.) Diversity Panel To Temperature And Photoperiod
Contact: derek.wright@usask.ca
Derek Wright, Sandesh Neupane, Taryn Heidecker, Teketel Haile, Clarice Coyne, Sripada Udupa, Eleonora Barilli, Diego Rubiales, Tania Gioia, Reena Mehra, Ashutosh Sarker, Rajeev Dhakal, Babul Anwar, Debashish Sarker, Albert Vandenberg, and Kirstin E. Bett
Introduction
Project Collaborators:
- Department of Plant Sciences and Crop Development Centre, University of Saskatchewan, Saskatoon, Saskatchewan, Canada
- United States Department of Agriculture Western Region Plant Introduction Station, Pullman, Washington, USA
- International Center for Agriculture Research in the Dry Areas, Rabat, Morocco
- Institute for Sustainable Agriculture, Spanish National Research Council, Cordoba, Spain
- School of Agriculture, Forestry, Food and Environmental Sciences, University of Basilicata, Potenza, Italy
- International Center for Agriculture Research in the Dry Areas, New Delhi, India
- Local Initiatives for Biodiversity, Research and Development, Pokhara, Nepal
- Bangladesh Agricultural Research Institute, Jessore, Bangladesh
Project Sponsors:
- Saskatchewan Pulse Growers Association
- Western Grains Research Foundation
- GenomePrairie
- GenomeCanada
- Saskatchewan Ministry of Agriculture
Shiny App
Download this folder and run app.R in R
Figures
Figure 1
Figure 2
Figure 3
Figure 4
Figure 5
Figure 6
Figure 7
Supplemental Figures
Supplemental Figure 1
Supplemental Figure 2
Supplemental Figure 3
Supplemental Figure 4
Supplemental Figure 5
Supplemental Figure 6
Supplemental Figure 7
Supplemental Figure 8
Supplemental Figure 9
Supplemental Figure 10
Supplemental Figure 11
Supplemental Tables
Supplemental Table 1
| Entry | Name | Origin | Source | Synonyms | |
|---|---|---|---|---|---|
| 1 | 1 | CDC Asterix AGL | Canada | USASK | |
| 2 | 2 | CDC Rosie AGL | Canada | USASK | |
| 3 | 3 | 3156-11 AGL | Canada | USASK | |
| 4 | 4 | CDC Greenstar AGL | Canada | USASK | |
| 5 | 5 | CDC Cherie AGL | Canada | USASK | |
| 31 | 31 | CN 105777 AGL | Egypt | PGRC | LENS 170;B 47 |
| 32 | 32 | CN 105789 AGL | Ethiopia | PGRC | LENS 184;B 136 |
| 33 | 33 | CN 105791 AGL | Egypt | PGRC | LENS 190;B 32 |
| 34 | 34 | CN 105862 AGL | Tunisia | PGRC | LENS 559 |
| 35 | 35 | CN 105863 AGL | Tunisia | PGRC | LENS 561 |
| 101 | 101 | ILL 6821 AGL | Ethiopia | ICARDA | IG 73685;FLIP 89-63L;ALEMAYA |
| 102 | 102 | ILL 6853 AGL | Syria | ICARDA | IG 73717 |
| 103 | 103 | ILL 7089 AGL | Russia | ICARDA | IG 73953 |
| 104 | 104 | ILL 7558 AGL | India | ICARDA | IG 76277 |
| 105 | 105 | ILL 7663 AGL | ICARDA | ICARDA | IG 114665;FLIP 95-7L |
| 320 | 320 | W6 27754 LSP AGL | USDA | USDA | |
| 321 | 321 | W6 27760 LSP AGL | USDA | USDA | |
| 322 | 322 | W6 27763 LSP AGL | USDA | USDA | |
| 323 | 323 | W6 27766 LSP AGL | USDA | USDA | |
| 324 | 324 | W6 27767 LSP AGL | USDA | USDA |
Supplemental Table 2
| Location | Year | Short.Name | Latitude | Longitude | Planting.Date | Temperature..mean. | Photoperiod..mean. | Number.of.Seeds.Sown | Plot.Type |
|---|---|---|---|---|---|---|---|---|---|
| Sutherland, Canada | 2016 | Su16 | 52.16770 | -106.5054 | 2016-04-27 | 16.7 | 15.9 | 60 | three, 1 meter rows |
| Rosthern, Canada | 2016 | Ro16 | 52.68920 | -106.2945 | 2016-05-06 | 17.2 | 16.2 | 60 | three, 1 meter rows |
| Marchouch, Morocco | 2016 | Mo16 | 33.62000 | -6.7200 | 2016-11-21 | 12.0 | 10.8 | 25 | one, 1 meter row |
| Cordoba, Spain | 2016 | Sp16 | 37.90000 | -4.8000 | 2016-12-13 | 12.5 | 10.9 | 25 | one, 1 meter row |
| Metaponto, Italy | 2016 | It16 | 40.39000 | 16.7800 | 2016-11-29 | 10.6 | 10.8 | 25 | one, 1 meter row |
| Bhopal, India | 2016 | In16 | 23.11000 | 76.8800 | 2016-12-04 | 17.6 | 10.9 | 25 | one, 1 meter row |
| Bardiya, Nepal | 2016 | Ne16 | 28.25000 | 81.5000 | 2016-11-14 | 19.2 | 11.0 | 25 | one, 1 meter row |
| Jessore, Bangladesh | 2016 | Ba16 | 23.19000 | 89.1900 | 2016-11-15 | 18.6 | 10.8 | 25 | one, 1 meter row |
| Sutherland, Canada | 2017 | Su17 | 52.16832 | -106.5108 | 2017-05-04 | 15.7 | 16.1 | 70 | three, 1 meter rows |
| Rosthern, Canada | 2017 | Ro17 | 52.69150 | -106.2897 | 2017-05-19 | 17.5 | 16.4 | 70 | three, 1 meter rows |
| Marchouch, Morocco | 2017 | Mo17 | 33.62000 | -6.7200 | 2017-12-21 | 11.8 | 11.5 | 50 | two, 1 meter rows |
| Cordoba, Spain | 2017 | Sp17 | 37.90000 | -4.8000 | 2017-12-14 | 11.7 | 11.1 | 50 | two, 1 meter rows |
| Metaponto, Italy | 2017 | It17 | 40.39000 | 16.7800 | 2017-11-28 | 11.2 | 10.8 | 50 | two, 1 meter rows |
| Bhopal, India | 2017 | In17 | 23.11500 | 76.8850 | 2017-11-09 | 20.6 | 10.7 | 50 | two, 1 meter rows |
| Jessore, Bangladesh | 2017 | Ba17 | 23.19500 | 89.1950 | 2017-12-03 | 21.7 | 11.0 | 50 | two, 1 meter rows |
| Central Ferry, USA | 2018 | Us18 | 46.65000 | -117.7600 | 2018-03-29 | 15.8 | 14.3 | 50 | two, 1 meter rows |
| Sutherland, Canada | 2018 | Su18 | 52.16890 | -106.5149 | 2018-05-09 | 17.6 | 16.1 | 70 | three, 1 meter rows |
| Bardiya, Nepal | 2017 | Ne17 | 28.42000 | 81.8600 | 2017-11-03 | 19.4 | 10.8 | 50 | two, 1 meter rows |
Supplemental Table 3
| Entry | Name | a | b | c | d | RR | Environments | a_p.value | b_p.value | c_p.value | d_p.value | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 | CDC Asterix AGL | -0.0187717 | 0.0003372 | 0.0020456 | NA | 0.8978347 | 16 | 0.0000000 | 0.0000001 | 0.0000000 | NA |
| 2 | 1 | CDC Asterix AGL | 0.0072693 | -0.0012017 | -0.0003174 | 0.0001397 | 0.8992827 | 16 | 0.6202032 | 0.1688352 | 0.8110850 | 0.0793975 |
| 61 | 31 | CN 105777 AGL | -0.0203402 | 0.0006260 | 0.0020791 | NA | 0.8417776 | 18 | 0.0000000 | 0.0000000 | 0.0000000 | NA |
| 62 | 31 | CN 105777 AGL | -0.0299805 | 0.0011958 | 0.0029539 | -0.0000518 | 0.8473458 | 18 | 0.1417083 | 0.3178702 | 0.1107758 | 0.6321050 |
| 201 | 101 | ILL 6821 AGL | -0.0207765 | 0.0001801 | 0.0024844 | NA | 0.9055885 | 14 | 0.0000000 | 0.0006591 | 0.0000000 | NA |
| 202 | 101 | ILL 6821 AGL | -0.0149886 | -0.0001621 | 0.0019592 | 0.0000311 | 0.9051060 | 14 | 0.2937562 | 0.8467141 | 0.1321410 | 0.6828037 |
| 647 | 324 | W6 27767 LSP AGL | -0.0194010 | 0.0002353 | 0.0022805 | NA | 0.8697454 | 15 | 0.0000000 | 0.0000289 | 0.0000000 | NA |
| 648 | 324 | W6 27767 LSP AGL | -0.0080395 | -0.0004354 | 0.0012494 | 0.0000609 | 0.8679062 | 15 | 0.5871621 | 0.6178443 | 0.3531932 | 0.4421900 |
Supplemental Table 4
| Temperate_Location | SouthAsian_Location | Mediterranean_Location | RR | Genotypes | |
|---|---|---|---|---|---|
| 1 | Ro17 | In16 | Sp16 | 0.461770 | 159 |
| 2 | Su18 | In16 | Sp16 | 0.462242 | 159 |
| 3 | Ro16 | In16 | Sp16 | 0.466809 | 159 |
| 4 | Su17 | In16 | Sp16 | 0.469932 | 159 |
| 5 | Su16 | In16 | Sp16 | 0.473691 | 159 |
| 6 | Ro17 | In16 | It17 | 0.475920 | 159 |
| 211 | Ro17 | Ba17 | Sp17 | 0.858843 | 291 |
| 212 | Su16 | Ba17 | Mo16 | 0.858923 | 291 |
| 213 | Ro16 | Ba17 | Sp17 | 0.859936 | 291 |
| 214 | Us18 | Ba17 | Sp17 | 0.861168 | 289 |
| 215 | Su17 | Ba17 | Sp17 | 0.862977 | 291 |
| 216 | Su16 | Ba17 | Sp17 | 0.863054 | 291 |